PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G037000.1
Common NameB456_009G037000, LOC105769637
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 143aa    MW: 15704.4 Da    PI: 8.1986
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G037000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-191363256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +ykGVr +k +g+WvAe+r p++   r r++lg++ taeeAa+a++aa  +l+g+
  Gorai.009G037000.1 13 RYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTAEEAARAYDAAVFCLRGN 63
                        69*****99.*******999843...48************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8791370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-311371IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-221372IPR016177DNA-binding domain
SMARTSM003804.3E-351376IPR001471AP2/ERF domain
CDDcd000183.84E-271372No hitNo description
PfamPF008475.6E-131362IPR001471AP2/ERF domain
PRINTSPR003677.7E-101425IPR001471AP2/ERF domain
PRINTSPR003677.7E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MVRPIGERDD GGRYKGVRMR KWGKWVAEVR QPNSRGRIWL GSYKTAEEAA RAYDAAVFCL  60
RGNSAKLNFP DNPPDIADAN ELTPDQIKEA AFRHARRDAG EEETEVAAAA AGNSYTECYF  120
GGGSVGDRSG RAYFHSPGVW TF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-171170363ATERF1
3gcc_A6e-171170363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9646412e-42JX964641.1 Gossypium hirsutum clone NBRI_TRANS-910 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445861.11e-102PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-36ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2UFW41e-102A0A0D2UFW4_G
STRINGPOPTR_0018s00700.13e-46(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-30ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]